Stem-loop sequence zma-MIR397b

Accession

MI0013230 (change log)

Description

Zea mays miR397b stem-loop

Gene family

MIPF0000120; MIR397

Literature search

12 open access papers mention zma-MIR397b
(68 sentences)

Stem-loop

   --auc      c         a      a     cgu   ucc 
5'      auugag gcagcguug ugagcc gccgc   gcc   c
        |||||| ||||||||| |||||| |||||   |||   c
3'      uaacuc cgucgcgac acucgg cggcg   cgg   u
   cgcau      a         c      -     --u   cug 

Deep sequencing

2147 reads, 1.77e+03 reads per million, 179 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr5: 84610591-84610674 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075B983_4577
• miRBase Tracker:MI0013230

Mature sequence zma-miR397b-5p

• Accession: MIMAT0014019
• Previous IDs: zma-miR397b
• Sequence: 2 - ucauugagcgcagcguugaug - 22
• Deep sequencing: 284 reads, 144 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00001A980F_4577

Mature sequence zma-miR397b-3p

• Accession: MIMAT0015353
• Previous IDs: zma-miR397b*
• Sequence: 63 - ccagcgcugcacucaauuacg - 83
• Deep sequencing: 29 reads, 9 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075C470_4577

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).