Stem-loop zma-MIR396h

Accession

MI0013228

Description

Zea mays zma-MIR396h precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

23 open access papers mention zma-MIR396h
(78 sentences)

Sequence

756 reads, 0 reads per million, 4 experiments

uUCCCACAGCUUUAUUGAACUGcaugcaccugcugaugcggguggaggaguugaagcugccgcuccucugagagaugcaguucaagaaagcuguggaagaucacaaagaaggccaucugauuac
...((((((((((.(((((((((((.(((((((....)))))))(((((((.(......).)))))))......))))))))))).))))))))))..(((((..............)))))..

Structure

-------------------------uUC          A           gcaccugcugaugcgggug       u aa 
                            CCACAGCUUU UUGAACUGcau                   gaggagu g  g
                            |||||||||| |||||||||||                   ||||||| |   
                            ggugucgaaa aacuugacgua                   cuccucg c  c
cauuagucuaccggaagaaacacuagaa          g           -------------gagagu       c gu 

Annotation confidence Not enough data

Genome context

chr9: 15122758-15122881 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR396h

Mature zma-miR396h

• Accession: MIMAT0014017
• Description: Zea mays zma-miR396h mature miRNA
• Sequence: 2 - UCCCACAGCUUUAUUGAACUG - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716