Stem-loop sequence zma-MIR396h

Accession

MI0013228 (change log)

Description

Zea mays miR396h stem-loop

Gene family

MIPF0000047; MIR396

Literature search

23 open access papers mention zma-MIR396h
(77 sentences)

Stem-loop

   -------------------------uuc          a           gcaccugcugaugcggguggagg 
5'                             ccacagcuuu uugaacugcau                       a
                               |||||||||| |||||||||||                       g
3'                             ggugucgaaa aacuugacgua                       u
   cauuagucuaccggaagaaacacuagaa          g           gagagucuccucgccgucgaagu 

Deep sequencing

745 reads, 548 reads per million, 142 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr9: 15122758-15122881 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from zma-MIR396h

• zma-MIR396b: chr9: 15122740-15122875 [-]
• zma-MIR396h: chr9: 15122758-15122881 [+]

Database links

• miRBase Tracker:MI0013228

Mature sequence zma-miR396h

• Accession: MIMAT0014017
• Sequence: 2 - ucccacagcuuuauugaacug - 22
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).