Stem-loop zma-MIR396f

Accession

MI0013226

Description

Zea mays zma-MIR396f precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

22 open access papers mention zma-MIR396f
(77 sentences)

Sequence

754 reads, 1888 reads per million, 4 experiments

uUUCCACAGCUUUCUUGAACUUcuucuucuucuucucucuuggaacggcagcuuucuucgaaucugucucucucucucucaucuccgaagacgaaGGUCAAGAAAGCUGUGGGAAGa
((((((((((((((((((.((((.(((((............(((..(((((..(((...))).)))))..))).............))))).)))).))))))))))))))))))..

Structure

--                  A    u     -uucuucucucuu   ac     cu   u 
  uUUCCACAGCUUUCUUGA CUUc ucuuc             gga  ggcag  uuc  
  |||||||||||||||||| |||| |||||             |||  |||||  ||| u
  AAGGGUGUCGAAAGAACU Gaag agaag             ucu  cuguc  aag  
aG                  G    c     ccucuacucucuc   cu     -u   c 

Annotation confidence High

Genome context

chr5: 220211653-220211769 [+]

Mature zma-miR396f-5p

• Accession: MIMAT0014015
• Description: Zea mays zma-miR396f-5p mature miRNA
• Sequence: 2 - UUCCACAGCUUUCUUGAACUU - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR396f-3p

• Accession: MIMAT0015350
• Description: Zea mays zma-miR396f-3p mature miRNA
• Sequence: 96 - GGUCAAGAAAGCUGUGGGAAG - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716