miRBase entry: zma-MIR396e

Stem-loop zma-MIR396e


Accession
MI0013225
Description
Zea mays zma-MIR396e precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
22 open access papers mention zma-MIR396e
(78 sentences)

Sequence

601 reads, 2446 reads per million, 4 experiments
uUUCCACAGCUUUCUUGAACUUcuucuucuucucucucuuagaagggccguauagcuucuuugaaccucucucucucucucucucaaaaguguacacgaacacuuucuucauucucugccucucgcucucugaucuccgaagaaGGUCAAGAAAGCCGUGGGAAGa
(((((((.((((((((((.(((((((..........((..(((((..........)))))..))......................(((((((......)))))))...........((.....))............))))))).)))))))))).)))))))..

Structure
--       A          A       ----------------------------------------------------------------uucuucucuc  uu     ggcc 
  uUUCCAC GCUUUCUUGA CUUcuuc                                                                          uc  agaag    g
  ||||||| |||||||||| |||||||                                                                          ||  |||||     
  AAGGGUG CGAAAGAACU Gaagaag                                                                          ag  ucuuc    u
aG       C          G       ccucuagucucucgcucuccgucucuuacuucuuucacaagcacaugugaaaacucucucucucucucucucca  uu     gaua 


Annotation confidence High
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Genome context
chr4: 176331864-176332029 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from zma-MIR396e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR396e-5p

Accession MIMAT0014014
Description Zea mays zma-miR396e-5p mature miRNA
Sequence 2 - UUCCACAGCUUUCUUGAACUU - 22
Evidence experimental
Illumina [1]

Mature zma-miR396e-3p

Accession MIMAT0015349
Description Zea mays zma-miR396e-3p mature miRNA
Sequence 145 - GGUCAAGAAAGCCGUGGGAAG - 165
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716