Stem-loop zma-MIR395p

Accession

MI0013224

Description

Zea mays zma-MIR395p precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

18 open access papers mention zma-MIR395p
(85 sentences)

Sequence

3 reads, 15 reads per million, 2 experiments

aGUUCCCUUCAAGCACUUCACAUgaggcaccauucaaaugacaacuccauuuaagauuauguguaauGUGAAGUGUUUGGGGGAACUCu
((((((((.((((((((((((((.(.(((..(((.(((((.......)))))..)))..))).).))))))))))))))))))))))..

Structure

--        U              g g   cc   -c     ac 
  aGUUCCCU CAAGCACUUCACAU a gca  auu  aaaug  a
  |||||||| |||||||||||||| | |||  |||  |||||  a
  UCAAGGGG GUUUGUGAAGUGua u ugu  uag  uuuac  c
uC        -              a g   au   aa     cu 

Annotation confidence Not enough data

Genome context

chr10: 145466402-145466490 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from zma-MIR395p

Mature zma-miR395p-5p

• Accession: MIMAT0015348
• Description: Zea mays zma-miR395p-5p mature miRNA
• Sequence: 2 - GUUCCCUUCAAGCACUUCACAU - 23
• Evidence: experimental ; Illumina [1]

Mature zma-miR395p-3p

• Accession: MIMAT0014013
• Description: Zea mays zma-miR395p-3p mature miRNA
• Sequence: 68 - GUGAAGUGUUUGGGGGAACUC - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716