Stem-loop sequence zma-MIR395o

Accession

MI0013223 (change log)

Description

Zea mays miR395o stem-loop

Gene family

MIPF0000016; MIR395

Literature search

18 open access papers mention zma-MIR395o
(85 sentences)

Stem-loop

   -----aguucucuucaagcacuucacgaggcaucacacuga   c   ug           -               u     aucauuugcauuugcuugauguuagucaugca 
5'                                          gag uuu  ugaaguguuug ggggaacucuuggug cacaa                                c
                                            ||| |||  ||||||||||| ||||||||||||||| |||||                                 
3'                                          uuc aga  acuucacgaac ucccuugaggaucau guguu                                c
   ucucaaguggguuugugaaguguuaccgggaaauaauucag   c   gu           a               u     uugcaacgguacaggaaauagaguauagugua 

Deep sequencing

551 reads, 566 reads per million, 148 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr10: 145466084-145466309 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from zma-MIR395o

• zma-MIR395n: chr10: 145465911-145465976 [+]
• zma-MIR395o: chr10: 145466084-145466309 [+]
• zma-MIR395p: chr10: 145466402-145466490 [+]

Database links

• miRBase Tracker:MI0013223

Mature sequence zma-miR395o-5p

• Accession: MIMAT0015347
• Previous IDs: zma-miR395o*
• Sequence: 2 - guucucuucaagcacuucacga - 23
• Deep sequencing: 8 reads, 4 experiments
• Evidence: experimental; Illumina [1]

Mature sequence zma-miR395o-3p

• Accession: MIMAT0014012
• Previous IDs: zma-miR395o
• Sequence: 205 - gugaaguguuugggugaacuc - 225
• Deep sequencing: 70 reads, 16 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).