miRBase entry: zma-MIR395l

Stem-loop zma-MIR395l


Accession
MI0013220
Description
Zea mays zma-MIR395l precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
18 open access papers mention zma-MIR395l
(88 sentences)

Sequence

aGUUCCUUCCAAACACUUCACCAgcuaggccaugcacaagaugaacccacauuaggcuaGUGAAGUGUUUGGAGGAACUCu
(((((((.(((((((((((((.((((..((...))....((((......)))).)))).))))))))))))))))))))..

Structure
--       U             C    aggccaugcacaa    aa 
  aGUUCCU CCAAACACUUCAC Agcu             gaug  c
  ||||||| ||||||||||||| ||||             ||||   
  UCAAGGA GGUUUGUGAAGUG ucgg             uuac  c
uC       -             a    ------------a    ac 


Annotation confidence Not enough data
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Genome context
chr10: 78600412-78600492 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from zma-MIR395l
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR395l-5p

Accession MIMAT0015344
Description Zea mays zma-miR395l-5p mature miRNA
Sequence 2 - GUUCCUUCCAAACACUUCACCA - 23
Evidence not_experimental

Mature zma-miR395l-3p

Accession MIMAT0014009
Description Zea mays zma-miR395l-3p mature miRNA
Sequence 60 - GUGAAGUGUUUGGAGGAACUC - 80
Evidence not_experimental

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716