Stem-loop zma-MIR395i

Accession

MI0013217

Description

Zea mays zma-MIR395i precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

18 open access papers mention zma-MIR395i
(85 sentences)

Sequence

6 reads, 18 reads per million, 3 experiments

aGUUCCCUACAAGCACUUCACGAuaccuuggcuuaauaaaggccaguuGUGAAGUGUUUGGGGGAACUCu
((((((((.(((((((((((((((....((((((.....)))))))))))))))))))))))))))))..

Structure

--        A               accu      a 
  aGUUCCCU CAAGCACUUCACGAu    uggcuu a
  |||||||| |||||||||||||||    |||||| u
  UCAAGGGG GUUUGUGAAGUGuug    accgga a
uC        -               ----      a 

Annotation confidence Not enough data

Genome context

chr2: 6286588-6286657 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from zma-MIR395i

Mature zma-miR395i-5p

• Accession: MIMAT0015341
• Description: Zea mays zma-miR395i-5p mature miRNA
• Sequence: 2 - GUUCCCUACAAGCACUUCACGA - 23
• Evidence: experimental ; Illumina [1]

Mature zma-miR395i-3p

• Accession: MIMAT0014006
• Description: Zea mays zma-miR395i-3p mature miRNA
• Sequence: 49 - GUGAAGUGUUUGGGGGAACUC - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716