miRBase entry: zma-MIR395e

Stem-loop zma-MIR395e


Accession
MI0013213
Description
Zea mays zma-MIR395e precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
18 open access papers mention zma-MIR395e
(85 sentences)

Sequence

4 reads, 235 reads per million, 3 experiments
aGUUCCCUUCAAGCACUUCACAUgaggcaccauucaaauaacacauuucaagauuaggugcauGUGAAGUGUUUGGGGGAACUCu
((((((((.((((((((((((((...(((((.........................)))))))))))))))))))))))))))..

Structure
--        U              gag     auucaaauaac 
  aGUUCCCU CAAGCACUUCACAU   gcacc           a
  |||||||| ||||||||||||||   |||||           c
  UCAAGGGG GUUUGUGAAGUGua   cgugg           a
uC        -              ---     auuagaacuuu 


Annotation confidence Not enough data
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Genome context
chr2: 6286411-6286495 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from zma-MIR395e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR395e-5p

Accession MIMAT0015337
Description Zea mays zma-miR395e-5p mature miRNA
Sequence 2 - GUUCCCUUCAAGCACUUCACAU - 23
Evidence experimental
Illumina [1]

Mature zma-miR395e-3p

Accession MIMAT0014002
Description Zea mays zma-miR395e-3p mature miRNA
Sequence 64 - GUGAAGUGUUUGGGGGAACUC - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716