miRBase entry: zma-MIR395d

Stem-loop zma-MIR395d


Accession
MI0013212
Description
Zea mays zma-MIR395d precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
18 open access papers mention zma-MIR395d
(85 sentences)

Sequence

2 reads, 6 reads per million, 2 experiments
aGUUCUAUGCAAGCACUUCACGAggcauuguuucaagagcuuuuGUGAAGUGUUUGGGGGAACUCu
((((((.(.(((((((((((((((((.((......)).)).))))))))))))))).)))))))..

Structure
--      A G               -  a  gu 
  aGUUCU U CAAGCACUUCACGAg gc uu  u
  |||||| | ||||||||||||||| || ||   
  UCAAGG G GUUUGUGAAGUGuuu cg ga  u
uC      - G               u  a  ac 


Annotation confidence Not enough data
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Genome context
chr2: 6276291-6276356 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from zma-MIR395d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR395d-5p

Accession MIMAT0015336
Description Zea mays zma-miR395d-5p mature miRNA
Sequence 2 - GUUCUAUGCAAGCACUUCACGA - 23
Evidence experimental
Illumina [1]

Mature zma-miR395d-3p

Accession MIMAT0014001
Description Zea mays zma-miR395d-3p mature miRNA
Sequence 45 - GUGAAGUGUUUGGGGGAACUC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716