Stem-loop sequence zma-MIR393b

Accession

MI0013210 (change log)

Description

Zea mays miR393b stem-loop

Gene family

MIPF0000083; MIR393

Literature search

20 open access papers mention zma-MIR393b
(72 sentences)

Stem-loop

   --g                         auuccuuccauuuuuucaugcauggc 
5'    uccaaagggaucgcauugauccauc                          u
      |||||||||||||||||||||||||                           
3'    agguuuuccuagcguaacuagguag                          g
   cgg                         cuguucaggaacgucugcugcuucug 

Deep sequencing

980 reads, 765 reads per million, 150 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr3: 17997197-17997304 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013210

Mature sequence zma-miR393b-5p

• Accession: MIMAT0013999
• Previous IDs: zma-miR393b
• Sequence: 2 - uccaaagggaucgcauugaucc - 23
• Deep sequencing: 457 reads, 138 experiments
• Evidence: experimental; Illumina [1]

Mature sequence zma-miR393b-3p

• Accession: MIMAT0015334
• Previous IDs: zma-miR393b*
• Sequence: 86 - aucaaugcgauccuuuuggagg - 107
• Deep sequencing: 269 reads, 111 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).