Stem-loop zma-MIR393b

Accession

MI0013210

Description

Zea mays zma-MIR393b precursor miRNA

Gene family

MIPF0000083; MIR393

Literature search

20 open access papers mention zma-MIR393b
(73 sentences)

Sequence

53 reads, 96 reads per million, 5 experiments

gUCCAAAGGGAUCGCAUUGAUCCaucauuccuuccauuuuuucaugcauggcuggucuucgucgucugcaaggacuugucgauggAUCAAUGCGAUCCUUUUGGAGGc
.(((((((((((((((((((((((((........(((......)))...(((.((((((.((.....)).)))))).))))))))))))))))))))))))))))...

Structure

--g                         auuccuuccauuuuuucaugcau   u      c  c 
   UCCAAAGGGAUCGCAUUGAUCCauc                       ggc ggucuu gu g
   |||||||||||||||||||||||||                       ||| |||||| || u
   AGGUUUUCCUAGCGUAACUAgguag                       cug ucagga cg c
cGG                         -----------------------   u      a  u 

Annotation confidence Not enough data

Genome context

chr3: 17997197-17997304 [+]

Mature zma-miR393b-5p

• Accession: MIMAT0013999
• Description: Zea mays zma-miR393b-5p mature miRNA
• Sequence: 2 - UCCAAAGGGAUCGCAUUGAUCC - 23
• Evidence: experimental ; Illumina [1]

Mature zma-miR393b-3p

• Accession: MIMAT0015334
• Description: Zea mays zma-miR393b-3p mature miRNA
• Sequence: 86 - AUCAAUGCGAUCCUUUUGGAGG - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716