miRBase entry: zma-MIR390a

Stem-loop zma-MIR390a


Accession
MI0013209
Description
Zea mays zma-MIR390a precursor miRNA
Gene family
MIPF0000101; MIR390

Literature search
14 open access papers mention zma-MIR390a
(105 sentences)

Sequence

1202 reads, 2342 reads per million, 110 experiments
gAAGCUCAGGAGGGAUAGCGCCuaggaaaacacauagaucggagccggccgcgaggagaaagaaagagccaagagauaugugugaugaauaaucuacauggaucuuggcuagcuuuuguguucuccucuggaggcgugguucugucuaucaaucugaagCGCUAUCUAUCCUGAGCUCCAc
(.(((((((((.(((((((((...(((......(((((.(((((((((((..((((((((.(((((((((((((..((((((.(((.....)))))))))..))))))))..)))))...))))))))....))).)))))))))))))...)))...))))))))).))))))))).)..

Structure
-- A         G         Cua   aaacac     u        -   --gc        --a     --        ga      u   g 
  g AGCUCAGGA GGAUAGCGC   gga      auaga cggagccg gcc    gaggagaa   gaaag  agccaaga  uaugug gau a
  | ||||||||| |||||||||   |||      ||||| |||||||| |||    ||||||||   |||||  ||||||||  |||||| ||| a
  C UCGAGUCCU UCUAUCGCg   ucu      uaucu gucuuggu cgg    cuccucuu   uuuuc  ucgguucu  guacau cua u
cA C         A         aag   ---aac     -        g   aggu        gug     ga        ag      -   a 


Annotation confidence High
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Genome context
chr1: 298107396-298107576 [+]

Database links

Mature zma-miR390a-5p

Accession MIMAT0013998
Description Zea mays zma-miR390a-5p mature miRNA
Sequence 2 - AAGCUCAGGAGGGAUAGCGCC - 22
Evidence experimental
Illumina [1]
Database links

Mature zma-miR390a-3p

Accession MIMAT0015333
Description Zea mays zma-miR390a-3p mature miRNA
Sequence 160 - CGCUAUCUAUCCUGAGCUCCA - 180
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716