Stem-loop sequence zma-MIR171m

Accession

MI0013207 (change log)

Description

Zea mays miR171m stem-loop

Gene family

MIPF0000030; MIR171_1

Literature search

19 open access papers mention zma-MIR171m
(50 sentences)

Stem-loop

   --           c          ag         aua au 
5'   guauuggcgcg cucaauccga  gcguggcug   g  u
     ||||||||||| ||||||||||  |||||||||   |  g
3'   uauaacugcgc gaguuagguu  uguaccgac   c  g
   uc           c          cu         -gg gc 

Deep sequencing

2797 reads, 2.28e+03 reads per million, 189 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr5: 20785928-20786009 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013207

Mature sequence zma-miR171m-5p

• Accession: MIMAT0015331
• Previous IDs: zma-miR171m*
• Sequence: 2 - uauuggcgcgccucaauccga - 22
• Deep sequencing: 111 reads, 38 experiments
• Evidence: experimental; Illumina [1]

Mature sequence zma-miR171m-3p

• Accession: MIMAT0013996
• Previous IDs: zma-miR171m
• Sequence: 61 - ggauugagccgcgucaauauc - 81
• Deep sequencing: 462 reads, 21 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).