Stem-loop zma-MIR171m

Accession

MI0013207

Description

Zea mays zma-MIR171m precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

19 open access papers mention zma-MIR171m
(50 sentences)

Sequence

399 reads, 2041 reads per million, 13 experiments

gUAUUGGCGCGCCUCAAUCCGAaggcguggcugauagauuggcgcggcagccauguucuuGGAUUGAGCCGCGUCAAUAUCu
(((((((((((.((((((((((.((((((((((...(.....)....)))))))))).)))))))))).)))))))))))..

Structure

--           C          a          -aua a 
  gUAUUGGCGCG CUCAAUCCGA ggcguggcug    g u
  ||||||||||| |||||||||| ||||||||||    | u
  UAUAACUGCGC GAGUUAGGuu uuguaccgac    c g
uC           C          c          ggcg g 

Annotation confidence Not enough data

Genome context

chr5: 20785928-20786009 [-]

Mature zma-miR171m-5p

• Accession: MIMAT0015331
• Description: Zea mays zma-miR171m-5p mature miRNA
• Sequence: 2 - UAUUGGCGCGCCUCAAUCCGA - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR171m-3p

• Accession: MIMAT0013996
• Description: Zea mays zma-miR171m-3p mature miRNA
• Sequence: 61 - GGAUUGAGCCGCGUCAAUAUC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716