Stem-loop zma-MIR169r

Accession

MI0013205

Description

Zea mays zma-MIR169r precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

30 open access papers mention zma-MIR169r
(221 sentences)

Sequence

503 reads, 758 reads per million, 4 experiments

gCAGCCAAGGAUGACUUGCCGGguauuuugagcaugcauguuacaggggagcauaugcaaucuguuuggaauuuugagcccauaccgugcggugccugucuuccGGCAAGUUGUCCUUGGCUACAu
(.(((((((((((((((((((((......(.(((((((((.((...(((..((..(.(((.....))).)....))..))).)).))))).))))).....))))))))))))))))))))).)..

Structure

-- C                     uauuuu a    -     u  cag   ag  --ua g   u 
  g AGCCAAGGAUGACUUGCCGGg      g gcau gcaug ua   ggg  ca    u caa c
  | |||||||||||||||||||||      | |||| ||||| ||   |||  ||    | ||| u
  C UCGGUUCCUGUUGAACGGccu      c cgug cgugc au   ccc  gu    a guu g
uA A                     -ucugu -    g     c  --a   ga  uuua g   u 

Annotation confidence Not enough data

Genome context

chr9: 111791259-111791384 [-]

Mature zma-miR169r-5p

• Accession: MIMAT0013994
• Description: Zea mays zma-miR169r-5p mature miRNA
• Sequence: 2 - CAGCCAAGGAUGACUUGCCGG - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR169r-3p

• Accession: MIMAT0015329
• Description: Zea mays zma-miR169r-3p mature miRNA
• Sequence: 105 - GGCAAGUUGUCCUUGGCUACA - 125
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716