Stem-loop zma-MIR167j

Accession

MI0013198

Description

Zea mays zma-MIR167j precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

31 open access papers mention zma-MIR167j
(129 sentences)

Sequence

22866 reads, 46365 reads per million, 7 experiments

aUGAAGCUGCCAGCAUGAUCUGaaaccauacguguucuuugauucccaucugaagaaagaguuggcuuucauggagaaccgacggucaGAUCAUGUGGCAGUUUCAUUu
((((((((((((.((((((((((..((.(.((.(((((((((...(((.((........)).)))...)))..))))))))).))))))))))))))))))))))))..

Structure

--            G          aa  a a  u      --   uuc   u  gaa 
  aUGAAGCUGCCA CAUGAUCUGa  cc u cg guucuu  uga   cca cu   g
  |||||||||||| ||||||||||  || | || ||||||  |||   ||| ||    
  UACUUUGACGGU GUACUAGacu  gg a gc caagag  acu   ggu ga   a
uU            -          --  c -  -      gu   uuc   u  gaa 

Annotation confidence High

Genome context

chr1: 12791799-12791907 [+]

Mature zma-miR167j-5p

• Accession: MIMAT0013987
• Description: Zea mays zma-miR167j-5p mature miRNA
• Sequence: 2 - UGAAGCUGCCAGCAUGAUCUG - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR167j-3p

• Accession: MIMAT0015322
• Description: Zea mays zma-miR167j-3p mature miRNA
• Sequence: 89 - GAUCAUGUGGCAGUUUCAUU - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716