Stem-loop sequence zma-MIR164h

Accession

MI0013196 (change log)

Description

Zea mays miR164h stem-loop

Gene family

MIPF0000045; MIR164

Literature search

29 open access papers mention zma-MIR164h
(205 sentences)

Stem-loop

   --         c            aauucauu   u -      -   u     --   gacucacgcaucgccggcgcggcgagcugagcgcgugacacggaaagcagguccgcc 
5'   guggagaag agggcacgugug        cgu c caucga cgg cuggc  gcc                                                         g
     ||||||||| ||||||||||||        ||| | |||||| ||| |||||  |||                                                          
3'   uaccucuuc ucccguguacgu        gcg g guagcu gcc ggccg  cgg                                                         c
   gc         u            --------   u c      a   -     ac   accgaaacgaagcaccucgaugucaaucggccagcuagccggucgcgcccgcggccg 

Deep sequencing

67515 reads, 4.94e+04 reads per million, 212 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr8: 121773384-121773602 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013196

Mature sequence zma-miR164h-5p

• Accession: MIMAT0013985
• Previous IDs: zma-miR164h
• Sequence: 2 - uggagaagcagggcacgugug - 22
• Deep sequencing: 4042 reads, 126 experiments
• Evidence: experimental; Illumina [1]

Mature sequence zma-miR164h-3p

• Accession: MIMAT0015320
• Previous IDs: zma-miR164h*
• Sequence: 198 - caugugcccuucuucuccauc - 218
• Deep sequencing: 312 reads, 104 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).