Stem-loop zma-MIR164g

Accession

MI0013195

Description

Zea mays zma-MIR164g precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

28 open access papers mention zma-MIR164g
(202 sentences)

Sequence

1694 reads, 3844 reads per million, 113 experiments

uUGGAGAAGCAGGGCACGUGCAgagacacgccggagcacggccgccgccgaucuaccgaccucccaaaccugccuuaugguguggggguggaggucgucgguggaagcgauagcugucguuguugcuucgauguuguuagcuccuccugCACGUGCUCCCCUUCUCCACCa
.((((((((..((((((((((((.((......(((((((((((((((.((((((.((.(((.((((.(((........))).))))))))))))))).)))))(((((((((((....)))))))))))...)))))..)))))))))))))))))))..))))))))...

Structure

--u        CA            a  cacgcc     --     -----------------------------     c      a  g   u    a   ugc 
   UGGAGAAG  GGGCACGUGCAg ga      ggagc  acggc                             cgccg cgaucu cc acc ccca acc   c
   ||||||||  |||||||||||| ||      |||||  |||||                             ||||| |||||| || ||| |||| |||    
   ACCUCUUC  CUCGUGCACguc cu      ccucg  uguug                             guggc gcugga gg ugg gggu ugg   u
aCC        CC            -  ------     au     uagcuucguuguugcugucgauagcgaag     u      -  -   -    g   uau 

Annotation confidence Not enough data

Genome context

chr6: 142646355-142646525 [-]

Mature zma-miR164g-5p

• Accession: MIMAT0013984
• Description: Zea mays zma-miR164g-5p mature miRNA
• Sequence: 2 - UGGAGAAGCAGGGCACGUGCA - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR164g-3p

• Accession: MIMAT0015319
• Description: Zea mays zma-miR164g-3p mature miRNA
• Sequence: 150 - CACGUGCUCCCCUUCUCCACC - 170
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716