Stem-loop zma-MIR164e

Accession

MI0013193

Description

Zea mays zma-MIR164e precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

28 open access papers mention zma-MIR164e
(206 sentences)

Sequence

2199 reads, 3520 reads per million, 11 experiments

gUGGAGAAGCAGGACACGUGAGcgaccauccaguuccacucccgcuggcucgcugcuggagcucccggcggcuuggugaguuuggguggucguuCAUGUGUCCGCCCUCUCCACCg
(((((((.((.((((((((((((((((((((((...((((.(((((((...(((.....)))..)))))))...))))...))))))))))))))))))))))))..)))))))..

Structure

--       -A  A                      uuc    --c       cuc   g 
  gUGGAGA  GC GGACACGUGAGcgaccauccag   cacu   ccgcugg   gcu c
  |||||||  || ||||||||||||||||||||||   ||||   |||||||   ||| u
  CACCUCU  CG CCUGUGUACuugcugguggguu   gugg   ggcggcc   cga g
gC       CC  -                      uga    uuc       -cu   g 

Annotation confidence Not enough data

Genome context

chr1: 47137796-47137911 [+]

Mature zma-miR164e-5p

• Accession: MIMAT0013982
• Description: Zea mays zma-miR164e-5p mature miRNA
• Sequence: 2 - UGGAGAAGCAGGACACGUGAG - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR164e-3p

• Accession: MIMAT0015317
• Description: Zea mays zma-miR164e-3p mature miRNA
• Sequence: 95 - CAUGUGUCCGCCCUCUCCACC - 115
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716