Stem-loop zma-MIR160g

Accession

MI0013192

Description

Zea mays zma-MIR160g precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

21 open access papers mention zma-MIR160g
(75 sentences)

Sequence

678 reads, 1537 reads per million, 4 experiments

aUGCCUGGCUCCCUGUAUGCCAcacauguagcccaacccgugaugugauuggaugcugugggugGCGUGCAAGGAGCCAAGCAUGu
((((.(((((((.((((((((((.((((((..((((.(........).)))).))).))).)))))))))).))))))).))))..

Structure

--    C       C          a   -   gc    c cgu 
  aUGC UGGCUCC UGUAUGCCAc cau gua  ccaa c   g
  |||| ||||||| |||||||||| ||| |||  |||| |    
  UACG ACCGAGG ACGUGCGgug gug cgu  gguu g   a
uG    A       A          g   u   -a    a ugu 

Annotation confidence High

Genome context

chr6: 94036699-94036784 [+]

Mature zma-miR160g-5p

• Accession: MIMAT0013981
• Description: Zea mays zma-miR160g-5p mature miRNA
• Sequence: 2 - UGCCUGGCUCCCUGUAUGCCA - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR160g-3p

• Accession: MIMAT0015316
• Description: Zea mays zma-miR160g-3p mature miRNA
• Sequence: 65 - GCGUGCAAGGAGCCAAGCAUG - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716