Stem-loop zma-MIR159i

Accession

MI0013189

Description

Zea mays zma-MIR159i precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

31 open access papers mention zma-MIR159i
(155 sentences)

Sequence

264 reads, 1245 reads per million, 110 experiments

aguuugauucacuagaccugauccccuagacuagacggucuggucuuaaggcgGUGCUCCCUUCACACCAAUAAacggucgaucugaugggugguacagcugcucguucaugguucccacugucccaucucaucagagagagagaagaucaugagagagcgagagaugcuugagaugggcuugugguuugcaugaccgaggagcugccucguccccuucguugaccgcugUUUGGAGUGAAGGGAGCUCUGc
.............(((((.((((..(((...)))..)))).)))))....((((.(((((((((((.((((..(.((((((((..((.((((((..(((((.((((.(((((....((((...((((((((.(((((...........)).)))..((((.......))))))))))))...))))....))))).)))).)))))..))).)))..)))))))))).)..)))).))))))))))).))))

Structure

aguuugauucacuagaccugauccccuagacuagacggucuggucuuaag    U           A    UA a        cu  -u   -   ua     g    u     guuc    ugu        aucagagagagagaagauc 
                                                  gcgG GCUCCCUUCAC CCAA  A cggucgau  ga  ggg ugg  cagcu cucg ucaug    ccac   cccaucuc                   a
                                                  |||| ||||||||||| ||||  | ||||||||  ||  ||| |||  ||||| |||| |||||    ||||   ||||||||                    
                                                  cGUC CGAGGGAAGUG GGUU  u gccaguug  cu  ccc gcu  gucga gagc aguac    ggug   ggguagag                   u
--------------------------------------------------    U           A    Ug c        --  uc   u   cc     g    c     guuu    uuc        uucguagagagcgagagag 

Annotation confidence Not enough data

Genome context

chr8: 10912332-10912583 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR159i

Mature zma-miR159i-5p

• Accession: MIMAT0015313
• Description: Zea mays zma-miR159i-5p mature miRNA
• Sequence: 54 - GUGCUCCCUUCACACCAAUAA - 74
• Evidence: experimental ; Illumina [1]

Mature zma-miR159i-3p

• Accession: MIMAT0013978
• Description: Zea mays zma-miR159i-3p mature miRNA
• Sequence: 231 - UUUGGAGUGAAGGGAGCUCUG - 251
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716