miRBase entry: ssc-mir-1285

Stem-loop ssc-mir-1285


Accession
MI0013164
Description
Sus scrofa ssc-mir-1285 precursor miRNA
Gene family
MIPF0000579; mir-1273

Literature search
2 open access papers mention ssc-mir-1285
(4 sentences)

Sequence

192 reads, 371 reads per million, 11 experiments
gcugaucaguagugggaucgcgccugugaauagccacuguacuccagcCUGGGCAACAUAGCGAGACCCCGUcucuuuug
.......((.((((((.((.(((.((((....(((...((......))...)))..))))))).)).)))).))))....

Structure
gcugauc  u  -    a  g   c    aaua   acu  ac 
       ag ag uggg uc cgc ugug    gcc   gu  u
       || || |||| || ||| ||||    |||   ||   
       uc uc GCCC AG GCG AUAC    CGG   cg  c
---guuu  -  U    C  A   -    --AA   GUC  ac 


Annotation confidence Not enough data
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Genome context
chr1: 199694416-199694495 [-]

Database links

Mature ssc-miR-1285

Accession MIMAT0013954
Description Sus scrofa ssc-miR-1285 mature miRNA
Sequence 49 - CUGGGCAACAUAGCGAGACCCCGU - 72
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100