miRBase entry: ssc-mir-19b-2

Stem-loop ssc-mir-19b-2


Accession
MI0013159
Description
Sus scrofa ssc-mir-19b-2 precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
15 open access papers mention ssc-mir-19b-2
(31 sentences)

Sequence

3609 reads, 1107 reads per million, 15 experiments
uacaguuaguuuugcagguuugcauuucagcguauguauguguauauggcUGUGCAAAUCCAUGCAAAACUGAuugugau
((((((((((((((((((((((((...((((.((((((....)))))))))))))))).)).))))))))))))))))..

Structure
--                -  -      uuu    g      u 
  uacaguuaguuuugca gg uuugca   cagc uaugua g
  |||||||||||||||| || ||||||   |||| ||||||  
  guguuAGUCAAAACGU CC AAACGU   GUcg guauau u
ua                A  U      ---    -      g 


Annotation confidence Not enough data
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Genome context
chrX: 126199650-126199729 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ssc-mir-19b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-19b

Accession MIMAT0013950
Description Sus scrofa ssc-miR-19b mature miRNA
Sequence 51 - UGUGCAAAUCCAUGCAAAACUGA - 73
Evidence experimental
Illumina [1,3-4], cloned [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100