Stem-loop sequence ssc-mir-202

Accession

MI0013157 (change log)

Description

Sus scrofa miR-202 stem-loop

Gene family

MIPF0000121; mir-202

Literature search

7 open access papers mention ssc-mir-202
(10 sentences)

Stem-loop

   -  c       cc         a           g   gu 
5'  cg cguuccg  uuccuaugc uauacuucuuu agg  c
    || |||||||  ||||||||| ||||||||||| |||   
3'  gc gcggggc  aaggguacg auguggagaag ucc  u
   a  a       ca         g           -   gg 

Deep sequencing

82021 reads, 1.61e+04 reads per million, 15 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr14: 153169585-153169664 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR202
• miRBase Tracker:MI0013157

Mature sequence ssc-miR-202-5p

• Accession: MIMAT0013948
• Previous IDs: ssc-miR-202
• Sequence: 13 - uuccuaugcauauacuucuuu - 33
• Deep sequencing: 81212 reads, 15 experiments
• Evidence: experimental; Illumina [1-2]

Mature sequence ssc-miR-202-3p

• Accession: MIMAT0022956
• Sequence: 49 - agagguguaggcaugggaa - 67
• Deep sequencing: 737 reads, 15 experiments
• Evidence: experimental; Illumina [2]

References

1. PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).