miRBase entry: ssc-mir-676-1

Stem-loop ssc-mir-676-1


Accession
MI0013152
Description
Sus scrofa ssc-mir-676-1 precursor miRNA
Gene family
MIPF0000471; mir-676

Literature search
3 open access papers mention ssc-mir-676-1
(3 sentences)

Sequence

63 reads, 52 reads per million, 10 experiments
aacgcgugaCUCUUCAAUCUCAGGACUCGCAuaauuagcagaaugCCGUCCUAAGGUUGUUGAGUUcugcguuucugggc
((((((.(((((..((((((.(((((..((((..........)))).))))).))))))..))))).)))))).......

Structure
-------      u     UU      C     UC    aauu 
       aacgcg gaCUC  CAAUCU AGGAC  GCAu    a
       |||||| |||||  |||||| |||||  ||||     
       uugcgu UUGAG  GUUGGA UCCUG  Cgua    g
cgggucu      c     UU      A     -C    agac 


Annotation confidence Not enough data
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Genome context
chrX: 63280928-63281007 [+]

Database links

Mature ssc-miR-676-5p

Accession MIMAT0017382
Description Sus scrofa ssc-miR-676-5p mature miRNA
Sequence 10 - CUCUUCAAUCUCAGGACUCGCA - 31
Evidence experimental
Illumina [2-3]

Mature ssc-miR-676-3p

Accession MIMAT0013943
Description Sus scrofa ssc-miR-676-3p mature miRNA
Sequence 46 - CCGUCCUAAGGUUGUUGAGUU - 66
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100