Stem-loop sequence ssc-mir-222

Accession

MI0013151 (change log)

Description

Sus scrofa miR-222 stem-loop

Gene family

MIPF0000051; mir-221

Literature search

11 open access papers mention ssc-mir-222
(25 sentences)

Stem-loop

   ug  c   au              -     auc   ucau 
5'   cc uca  ggcucaguagccag uguag   cug    u
     || |||  |||||||||||||| |||||   |||    u
3'   gg agu  cugggucaucgguc acauc   gac    g
   --  u   cu              u     gau   uaau 

Deep sequencing

4193 reads, 293 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chrX: 45275613-45275692 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ssc-mir-222

• ssc-mir-222: chrX: 45275613-45275692 [-]
• ssc-mir-221: chrX: 45274873-45274942 [-]

Database links

• EntrezGene:MIR222
• miRBase Tracker:MI0013151

Mature sequence ssc-miR-222

• Accession: MIMAT0013942
• Sequence: 51 - agcuacaucuggcuacugggucuc - 74
• Deep sequencing: 4177 reads, 15 experiments
• Evidence: experimental; Illumina [1-3]

References

1. PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
3. PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).