Stem-loop sequence ssc-mir-222

AccessionMI0013151 (change log)
DescriptionSus scrofa miR-222 stem-loop
Gene family MIPF0000051; mir-221
Literature search

11 open access papers mention ssc-mir-222
(25 sentences)

   ug  c   au              -     auc   ucau 
5'   cc uca  ggcucaguagccag uguag   cug    u
     || |||  |||||||||||||| |||||   |||    u
3'   gg agu  cugggucaucgguc acauc   gac    g
   --  u   cu              u     gau   uaau 
Get sequence
Deep sequencing
4193 reads, 293 reads per million, 15 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chrX: 45275613-45275692 [-]
Clustered miRNAs
< 10kb from ssc-mir-222
ssc-mir-222chrX: 45275613-45275692 [-]
ssc-mir-221chrX: 45274873-45274942 [-]
Database links

Mature sequence ssc-miR-222

Accession MIMAT0013942

51 - 


 - 74

Get sequence
Deep sequencing4177 reads, 15 experiments
Evidence experimental; Illumina [1-3]


PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).