Stem-loop sequence ssc-mir-1306

AccessionMI0013148 (change log)
DescriptionSus scrofa miR-1306 stem-loop
Gene family MIPF0000531; mir-1306
Literature search

3 open access papers mention ssc-mir-1306
(3 sentences)

Stem-loop 
   ---------    -c       uccccu  a        guga   a 
5'          gucu  caccacc      gc aacgucca    ugc g
            ||||  |||||||      || ||||||||    |||  
3'          cagg  guggugg      cg uugcaggu    aug a
   caagccgga    ua       ---ucu  g        ---a   g
Get sequence
Deep sequencing
115 reads, 0 reads per million, 12 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr14: 55110958-55111037 [+]
sense
ENSSSCT00000011096 ; ssc-mir-1306.1-201; 3'UTR (exon 1)
Database links

Mature sequence ssc-miR-1306-5p

Accession MIMAT0013937
Sequence

8 -  

ccaccuccccugcaaacgucca

 - 29

Get sequence
Deep sequencing44 reads, 7 experiments
Evidence experimental; Illumina [1-3]

Mature sequence ssc-miR-1306-3p

Accession MIMAT0013938
Sequence

48 -  

acguuggcucugguggugaug

 - 68

Get sequence
Deep sequencing71 reads, 11 experiments
Evidence experimental; Illumina [1-3]

References

1
PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
3
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).