miRBase entry: ssc-mir-1306

Stem-loop ssc-mir-1306


Accession
MI0013148
Description
Sus scrofa ssc-mir-1306 precursor miRNA
Gene family
MIPF0000531; mir-1306

Literature search
3 open access papers mention ssc-mir-1306
(3 sentences)

Sequence

7 reads, 14 reads per million, 4 experiments
gucuccaCCACCUCCCCUGCAAACGUCCAgugaugcagagguaauggACGUUGGCUCUGGUGGUGAUGgacaggccgaac
(((((((.((((.((...((.((((((((...((......))..)))))))).))...)).)))).))))..))).....

Structure
-----   --    C    U  CCU  A        gug  gc 
     guc  ucca CACC CC   GC AACGUCCA   au  a
     |||  |||| |||| ||   || ||||||||   ||   
     cgg  agGU GUGG GG   CG UUGCAggu   ug  g
caagc   ac    A    U  UCU  G        -aa  ga 


Annotation confidence Not enough data
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Genome context
chr14: 55110958-55111037 [+]

Database links

Mature ssc-miR-1306-5p

Accession MIMAT0013937
Description Sus scrofa ssc-miR-1306-5p mature miRNA
Sequence 8 - CCACCUCCCCUGCAAACGUCCA - 29
Evidence experimental
Illumina [1-3]

Mature ssc-miR-1306-3p

Accession MIMAT0013938
Description Sus scrofa ssc-miR-1306-3p mature miRNA
Sequence 48 - ACGUUGGCUCUGGUGGUGAUG - 68
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100