miRBase entry: ssc-mir-450b

Stem-loop ssc-mir-450b


Accession
MI0013140
Description
Sus scrofa ssc-mir-450b precursor miRNA
Gene family
MIPF0000128; mir-450

Literature search
5 open access papers mention ssc-mir-450b
(7 sentences)

Sequence

604 reads, 238 reads per million, 12 experiments
aaaauuauUUUUGCAAUAUGUUCCUGAAUAuguaauauaaguauaUUGGGAACAUUUUGCAUCCAUaguuuuguaucgau
((((((((...(((((.((((((((((((((.........)))).)))))))))).)))))...))))))))........

Structure
--------        UUU     U          -    gua 
        aaaauuau   UGCAA AUGUUCCUGA AUAu   a
        ||||||||   ||||| |||||||||| ||||   u
        uuuugaUA   ACGUU UACAAGGGUU uaug   a
uagcuaug        CCU     U          a    aau 


Annotation confidence Not enough data
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Genome context
chrUScaf3177: 4358-4437 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ssc-mir-450b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-450b-5p

Accession MIMAT0013927
Description Sus scrofa ssc-miR-450b-5p mature miRNA
Sequence 9 - UUUUGCAAUAUGUUCCUGAAUA - 30
Evidence experimental
Illumina [1-3]

Mature ssc-miR-450b-3p

Accession MIMAT0017380
Description Sus scrofa ssc-miR-450b-3p mature miRNA
Sequence 46 - UUGGGAACAUUUUGCAUCCAU - 66
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20433717
    Deciphering the porcine intestinal microRNA transcriptome
    Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
    BMC Genomics (2010) 11:275

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328