Stem-loop sequence ssc-mir-542

AccessionMI0013138 (change log)
DescriptionSus scrofa miR-542 stem-loop
Gene family MIPF0000185; mir-542
Literature search

6 open access papers mention ssc-mir-542
(6 sentences)

Stem-loop 
   -c       g c    gg    uca         a -  c 
5'   cucagac u ucgg  auca   ugucacgag g ac a
     ||||||| | ||||  ||||   ||||||||| | ||  
3'   gggucug a aguc  uagu   acaguguuc c ug c
   ga       g a    aa    uag         a g  u
Get sequence
Deep sequencing
11970 reads, 1.94e+03 reads per million, 15 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chrUScaf3177: 3348-3427 [+]
intergenic
Clustered miRNAs
< 10kb from ssc-mir-542
ssc-mir-542chrUScaf3177: 3348-3427 [+]
ssc-mir-450cchrUScaf3177: 4053-4133 [+]
ssc-mir-450achrUScaf3177: 4173-4278 [+]
ssc-mir-450bchrUScaf3177: 4358-4437 [+]
Database links

Mature sequence ssc-miR-542-5p

Accession MIMAT0013924
Sequence

12 -  

ucggggaucaucaugucacga

 - 32

Get sequence
Deep sequencing307 reads, 13 experiments
Evidence experimental; Illumina [1,3]

Mature sequence ssc-miR-542-3p

Accession MIMAT0013925
Sequence

49 -  

ugugacagauugauaacugaaa

 - 70

Get sequence
Deep sequencing11662 reads, 15 experiments
Evidence experimental; Illumina [1,3], cloned [2]

References

1
PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2
PMID:20180025 "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue" Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS Mol Biol Rep. 37:3567-3574(2010).
3
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).