Stem-loop sequence ssc-mir-425

AccessionMI0013133 (change log)
DescriptionSus scrofa miR-425 stem-loop
Gene family MIPF0000242; mir-425
Literature search

2 open access papers mention ssc-mir-425
(9 sentences)

Stem-loop 
   a  ug  uu  aau       u  c    ----    ag   g 
5'  ag  cu  gg   gacacga ca uccc    guug  ugg c
    ||  ||  ||   ||||||| || ||||    ||||  |||  
3'  uc  ga  cc   cugugcu gu aggg    cgau  acc a
   -  gu  -c  -gc       -  a    cuac    ga   c
Get sequence
Deep sequencing
2759 reads, 160 reads per million, 15 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr13: 34898111-34898190 [-]
intergenic
Clustered miRNAs
< 10kb from ssc-mir-425
ssc-mir-191chr13: 34898601-34898680 [-]
ssc-mir-425chr13: 34898111-34898190 [-]
Database links

Mature sequence ssc-miR-425-5p

Accession MIMAT0013917
Sequence

12 -  

aaugacacgaucacucccguuga

 - 34

Get sequence
Deep sequencing2456 reads, 15 experiments
Evidence experimental; Illumina [1-2]

Mature sequence ssc-miR-425-3p

Accession MIMAT0013918
Sequence

53 -  

aucgggaaugucguguccgccc

 - 74

Get sequence
Deep sequencing300 reads, 13 experiments
Evidence experimental; Illumina [1-2]

References

1
PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).