Stem-loop sequence ssc-mir-98

Accession

MI0013122 (change log)

Description

Sus scrofa miR-98 stem-loop

Gene family

MIPF0000002; let-7

Literature search

8 open access papers mention ssc-mir-98
(22 sentences)

Stem-loop

   gggu                 u    ---------      aggg 
5'     gagguaguaaguuguau guug         uggggu    a
       ||||||||||||||||| ||||         ||||||    u
3'     uuucaucauucaacaua caau         accccg    u
   ----                 u    agaagauua      gauu 

Deep sequencing

9176 reads, 1.53e+03 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chrX: 51800864-51800943 [-]
• Overlapping transcripts:

  sense

  OTTSUST00000011401 ; HUWE1-001; intron 60

  ENSSSCT00000021141 ; ssc-mir-98.1-201; exon 1

  ENSSSCT00000032330 ; HUWE1-201; intron 59

  ENSSSCT00000013481 ; HUWE1-202; intron 59

  ENSSSCT00000035055 ; HUWE1-001; intron 60

Clustered miRNAs

< 10kb from ssc-mir-98

• ssc-let-7f-1: chrX: 51801728-51801810 [-]
• ssc-mir-98: chrX: 51800864-51800943 [-]

Database links

• EntrezGene:MIR98
• miRBase Tracker:MI0013122

Mature sequence ssc-miR-98

• Accession: MIMAT0013905
• Sequence: 4 - ugagguaguaaguuguauuguu - 25
• Deep sequencing: 9175 reads, 15 experiments
• Evidence: experimental; Illumina [1-2]

References

1. PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2. PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).