Stem-loop sequence ssc-mir-345-1

AccessionMI0013117 (change log)
Previous IDsssc-mir-345
DescriptionSus scrofa miR-345-1 stem-loop
Gene family MIPF0000189; mir-345
Literature search

4 open access papers mention ssc-mir-345-1
(5 sentences)

Stem-loop 
   --           g u          c   u   ug g u 
5'   aacccaggucu c gacuccuagu cag gcu  u a g
     ||||||||||| | |||||||||| ||| |||  | |  
3'   uuggguccgga g cuggggauca guc cgg  g u g
   gu           g u          a   c   gu g c
Get sequence
Deep sequencing
483 reads, 6.67 reads per million, 15 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr7: 128658300-128658379 [+]
intergenic
Database links

Mature sequence ssc-miR-345-5p

Accession MIMAT0013899
Sequence

12 -  

gcugacuccuaguccagugc

 - 31

Get sequence
Deep sequencing88 reads, 9 experiments
Evidence experimental; Illumina [1-2]

Mature sequence ssc-miR-345-3p

Accession MIMAT0013900
Sequence

49 -  

cccugaacuaggggucuggag

 - 69

Get sequence
Deep sequencing792 reads, 15 experiments
Evidence experimental; Illumina [1-2]

References

1
PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2
PMID:20180025 "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue" Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS Mol Biol Rep. 37:3567-3574(2010).
3
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
4
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).