Stem-loop sequence ssc-mir-125a

AccessionMI0013115 (change log)
DescriptionSus scrofa miR-125a stem-loop
Gene family MIPF0000033; mir-10
Literature search

14 open access papers mention ssc-mir-125a
(36 sentences)

Stem-loop 
   -----g   ucu a uc  ug   c    ua        ----  a 
5'       gcc   g g  cc  aga ccuu  accuguga    gg c
         |||   | |  ||  ||| ||||  ||||||||    ||  
3'       cgg   c c  gg  ucu ggag  uggacacu    cc a
   ggccug   --u - ga  gu   u    --        ggga  u
Get sequence
Deep sequencing
13377 reads, 1.79e+03 reads per million, 15 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr6: 51858852-51858931 [+]
intergenic
Clustered miRNAs
< 10kb from ssc-mir-125a
ssc-mir-99bchr6: 51858217-51858286 [+]
ssc-let-7echr6: 51858376-51858455 [+]
ssc-mir-125achr6: 51858852-51858931 [+]
Database links

Mature sequence ssc-miR-125a

Accession MIMAT0013897
Sequence

11 -  

ucccugagacccuuuaaccugug

 - 33

Get sequence
Deep sequencing13312 reads, 15 experiments
Evidence experimental; Illumina [1,3-4], cloned [2]

References

1
PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2
PMID:20180025 "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue" Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS Mol Biol Rep. 37:3567-3574(2010).
3
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
4
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).