Stem-loop sequence ssc-mir-340-1

AccessionMI0013110 (change log)
Previous IDsssc-mir-340
DescriptionSus scrofa miR-340-1 stem-loop
Gene family MIPF0000191; mir-340
Literature search

2 open access papers mention ssc-mir-340-1
(4 sentences)

Stem-loop 
   uaccugg    au       -caa      u    g     ug 
5'        ugug  uauaaag    ugagac gauu ucaua  u
          ||||  |||||||    |||||| |||| |||||  c
3'        auac  auauuuc    acucug cuag ggugu  g
   -------    cg       auug      c    -     uu
Get sequence
Deep sequencing
8104 reads, 1.52e+03 reads per million, 15 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr2: 80118849-80118928 [+]
intergenic
Database links

Mature sequence ssc-miR-340

Accession MIMAT0013891
Sequence

13 -  

uuauaaagcaaugagacugauu

 - 34

Get sequence
Deep sequencing15784 reads, 15 experiments
Evidence experimental; Illumina [1-2]

References

1
PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
3
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).