Stem-loop sequence ssc-mir-499

AccessionMI0013096 (change log)
DescriptionSus scrofa miR-499 stem-loop
Gene family MIPF0000173; mir-499
Literature search

16 open access papers mention ssc-mir-499
(50 sentences)

Stem-loop 
   u   c       cguua        a          acucc 
5'  ggg gggcggc     agacuugc gugauguuua     u
    ||| |||||||     |||||||| ||||||||||     c
3'  ccc uucgucg     ucugaacg cacuacaagu     u
   -   -       ---ug        a          gcacc
Get sequence
Deep sequencing
620 reads, 0 reads per million, 15 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr17: 43571146-43571225 [+]
sense
ENSSSCT00000020719 ; ssc-mir-499.1-201; exon 1
ENSSSCT00000007974 ; MYH7B-201; intron 18
Database links

Mature sequence ssc-miR-499-5p

Accession MIMAT0013877
Previous IDsssc-miR-499
Sequence

15 -  

uuaagacuugcagugauguuu

 - 35

Get sequence
Deep sequencing544 reads, 15 experiments
Evidence experimental; Illumina [1-4]

Mature sequence ssc-miR-499-3p

Accession MIMAT0017373
Sequence

52 -  

aacaucacagcaagucugugcu

 - 73

Get sequence
Deep sequencing76 reads, 10 experiments
Evidence experimental; Illumina [2-3]

References

1
PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2
PMID:20433717 "Deciphering the porcine intestinal microRNA transcriptome" Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, Keller A, Stahler PF, Rajewsky N, Einspanier R BMC Genomics. 11:275(2010).
3
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
4
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).