miRBase entry: ssc-mir-30d

Stem-loop ssc-mir-30d


Accession
MI0013091
Description
Sus scrofa ssc-mir-30d precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
17 open access papers mention ssc-mir-30d
(32 sentences)

Sequence

3556 reads, 1044 reads per million, 12 experiments
cuguuguUGUAAACAUCCCCGACUGGAAGCUguaagacauagcuaagcuuucagucagauguuugcugccaccgacucu
..((.((.(((((((((...(((((((((((..............))))))))))).))))))))).)).)).......

Structure
-----cu  u  U         CCC           guaaga 
       gu gu GUAAACAUC   GACUGGAAGCU      c
       || || |||||||||   |||||||||||       
       ca cg cguuuguag   cugacuuucga      a
ucucagc  c  u         --a           aucgau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 6713518-6713596 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-30d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-30d

Accession MIMAT0013871
Description Sus scrofa ssc-miR-30d mature miRNA
Sequence 8 - UGUAAACAUCCCCGACUGGAAGCU - 31
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100