Stem-loop sequence osa-MIR2877

Accession

MI0013042 (change log)

Description

Oryza sativa miR2877 stem-loop

Literature search

2 open access papers mention osa-MIR2877
(2 sentences)

Stem-loop

   ------------aaucuugguuuaauguaucauccgauguccaaagugcagaugacgcagcuugggugcugauguggcaa         gu                -   c c  au    c         uc     u     c     u        --uuuug      gg    aacuaugaauuu  u 
5'                                                                                 uccacggug  gagaauuuugcauuua gcc c uc  gcua aguaugccu  aaguc acucc accac cccaaauc       gugcau  cuua            gc g
                                                                                   |||||||||  |||||||||||||||| ||| | ||  |||| |||||||||  ||||| ||||| ||||| ||||||||       ||||||  ||||            || g
3'                                                                                 aggugucac  cucuuaaaacgugaau cgg g ag  ugau ucauacggg  uuuag ugagg uggug ggguuuag       uacgua  gagu            cg a
   aaagggagauuuuuugugggaauuagaaccaaauuacauagugagcuccggguuucacgucuccuacguugaguccgaac         ug                g   a a  --    a         gc     c     a     -        uuguuua      aa    ------------  u 

Deep sequencing

26 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr4: 28585208-28585568 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013042

Mature sequence osa-miR2877

• Accession: MIMAT0013827
• Sequence: 292 - uugcauccucugcacuuugggccu - 315
• Deep sequencing: 6 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:19903869 "Rice MicroRNA effector complexes and targets" Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y Plant Cell. 21:3421-3435(2009).