Stem-loop sequence osa-MIR2873a

Accession

MI0013038 (change log)

Previous IDs

osa-MIR2873

Description

Oryza sativa miR2873 stem-loop

Gene family

MIPF0001679; MIR2873

Literature search

2 open access papers mention osa-MIR2873a
(2 sentences)

Stem-loop

   aauauauuc           c           c           u     uu 
5'          uuaccaaauuu aaguucaaacu aacuuuauuug gagaa  u
            ||||||||||| ||||||||||| ||||||||||| |||||  u
3'          aaugguuuaaa uucagguuuga uugaaguaaac cucuu  u
   -----uaac           -           a           u     ug 

Deep sequencing

126 reads, 50 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr11: 28933582-28933682 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013038

Mature sequence osa-miR2873a

• Accession: MIMAT0013823
• Previous IDs: osa-miR2873
• Sequence: 75 - aaguuuggacuuaaauuugguaac - 98
• Deep sequencing: 118 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000035B8FB_39947

References

1. PMID:19903869 "Rice MicroRNA effector complexes and targets" Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y Plant Cell. 21:3421-3435(2009).