miRBase entry: ola-mir-430c-1

Stem-loop ola-mir-430c-1


Accession
MI0013009
Description
Oryzias latipes ola-mir-430c-1 precursor miRNA
Gene family
MIPF0000003; mir-430

Literature search
3 open access papers mention ola-mir-430c-1
(10 sentences)

Sequence

cagacauucagaugaccuuaacauaggcacugacuugaauaucuuugcagUAAGUGCUACAUGUUGGGGUAGucuuggugucuagc
.(((((((.((((.((((((((((.((((((.(((..((.....))..))).))))))..)))))))))).)))).)))))))...

Structure
--c       c    g          -a      g   ug  u 
   agacauu agau accuuaacau  ggcacu acu  aa a
   ||||||| |||| ||||||||||  |||||| |||  || u
   ucugugg ucuG UGGGGUUGUA  UCGUGA Uga  uu c
cga       u    A          CA      A   cg  u 


Annotation confidence Not enough data
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Genome context
4: 6962-7047 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ola-mir-430c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-430c

Accession MIMAT0013805
Description Oryzias latipes ola-miR-430c mature miRNA
Sequence 51 - UAAGUGCUACAUGUUGGGGUAG - 72
Evidence experimental
in-situ [1], Northern [1]

References

  1. PubMed ID: 19770025
    Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development
    "Tani S, Kusakabe R, Naruse K, Sakamoto H, Inoue K"
    "Gene (2010) 449:41-49