miRBase entry: eca-mir-92a-2

Stem-loop eca-mir-92a-2


Accession
MI0012987
Description
Equus caballus eca-mir-92a-2 precursor miRNA
Gene family
MIPF0000013; mir-25

Literature search
1 open access papers mention eca-mir-92a-2
(2 sentences)

Sequence

26143 reads, 3957 reads per million, 1 experiments
ucauccguggguggggauuuguugcauuacuuguguuauauauaaagUAUUGCACUUGUCCCGGCCUGUggaaga
((.(((((((((.(((((..((.(((.(((((((((...)))).))))).)))))..))))).))))))))).))

Structure
  a         g     uu  u   u     -    u 
uc uccgugggu gggau  gu gca uacuu gugu  
|| ||||||||| |||||  || ||| ||||| |||| a
ag aggUGUCCG CCCUG  CA CGU AUgaa uaua  
  a         G     UU  -   U     a    u 


Annotation confidence Not enough data
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Genome context
chrX: 106692042-106692116 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from eca-mir-92a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-92a

Accession MIMAT0013089
Description Equus caballus eca-miR-92a mature miRNA
Sequence 48 - UAUUGCACUUGUCCCGGCCUGU - 69
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131