miRBase entry: eca-mir-545

Stem-loop eca-mir-545


Accession
MI0012981
Description
Equus caballus eca-mir-545 precursor miRNA
Gene family
MIPF0000098; mir-95


Sequence

143 reads, 22 reads per million, 1 experiments
cccagccuggcacauuaguaggccucaguaaauguuuauuggaugaauaaaugaaugacucaUCAACAAACAUUUAUUGUGUGCcugcuaacgugaucuccacagg
.....((((((((.((((((((((.((((((((((((....(((((.............)))))...)))))))))))).).))))))))).))).....).))))

Structure
cccag    - -----   a         - u            auug     auaaa 
     ccug g     cac uuaguaggc c caguaaauguuu    gauga     u
     |||| |     ||| ||||||||| | ||||||||||||    |||||     g
     ggac c     gug aaucgucCG G GUUAUUUACAAA    CUacu     a
-----    a cucua   c         U U            -CAA     cagua 


Annotation confidence High
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Genome context
chrX: 55500412-55500517 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-545
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-545

Accession MIMAT0013239
Description Equus caballus eca-miR-545 mature miRNA
Sequence 63 - UCAACAAACAUUUAUUGUGUGC - 84
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131