miRBase entry: eca-mir-502

Stem-loop eca-mir-502


Accession
MI0012971
Description
Equus caballus eca-mir-502 precursor miRNA
Gene family
MIPF0000139; mir-500

Literature search
1 open access papers mention eca-mir-502
(1 sentences)

Sequence

401 reads, 61 reads per million, 1 experiments
ugcucccccucucuaAUCCUUGCUAUCUGGGUGCUAgugcugucucaaugcAAUGCACCUGGGCAAGGAUUCAgagaggg
......(((((((((((((((((...((((((((...(((.........)))..))))))))))))))))).))))))))

Structure
ugcucc        -         UAU        UAg   ugu 
      cccucucu aAUCCUUGC   CUGGGUGC   ugc   c
      |||||||| |||||||||   ||||||||   |||   u
      gggagagA UUAGGAACG   GGUCCACG   Acg   c
------        C         ---        -UA   uaa 


Annotation confidence High
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Genome context
chrX: 40077407-40077486 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from eca-mir-502
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-502-5p

Accession MIMAT0013225
Description Equus caballus eca-miR-502-5p mature miRNA
Sequence 16 - AUCCUUGCUAUCUGGGUGCUA - 36
Evidence not_experimental

Mature eca-miR-502-3p

Accession MIMAT0013226
Description Equus caballus eca-miR-502-3p mature miRNA
Sequence 52 - AAUGCACCUGGGCAAGGAUUCA - 73
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131