Stem-loop eca-mir-500-2

Accession

MI0012969

Description

Equus caballus eca-mir-500-2 precursor miRNA

Gene family

MIPF0000139; mir-500

Literature search

1 open access papers mention eca-mir-500-2
(1 sentences)

Sequence

503 reads, 76 reads per million, 1 experiments

gcucccccucucUAAUCCUUGCUACCUGGGUGAGAgugcuuucugaaugcaaugcaccugggcaaggauuccgagagggagagu
((((.(((((((.(((((((((...(((((((....(((.........)))...))))))))))))))))..))))))).))))

Structure

    c       -U         UAC       AGAg   uuu 
gcuc cccucuc  AAUCCUUGC   CUGGGUG    ugc   c
|||| |||||||  |||||||||   |||||||    |||   u
ugag gggagag  uuaggaacg   gguccac    acg   g
    a       cc         ---       -gua   uaa 

Annotation confidence Not enough data

Genome context

chrX: 40075101-40075184 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from eca-mir-500-2

Mature eca-miR-500

• Accession: MIMAT0013223
• Description: Equus caballus eca-miR-500 mature miRNA
• Sequence: 13 - UAAUCCUUGCUACCUGGGUGAGA - 35
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131