miRBase entry: eca-mir-500-1

Stem-loop eca-mir-500-1


Accession
MI0012968
Description
Equus caballus eca-mir-500-1 precursor miRNA
Gene family
MIPF0000139; mir-500

Literature search
1 open access papers mention eca-mir-500-1
(1 sentences)

Sequence

508 reads, 77 reads per million, 1 experiments
gcucccccucucUAAUCCUUGCUACCUGGGUGAGAguguugucugaaugcaaugcaccugggcaaggauuccgagagcgagagc
((((.(.(((((.(((((((((...(((((((...(((((.....)))))....))))))))))))))))..))))).).))))

Structure
    c c     -U         UAC       -AGA     g 
gcuc c cucuc  AAUCCUUGC   CUGGGUG    guguu u
|||| | |||||  |||||||||   |||||||    ||||| c
cgag g gagag  uuaggaacg   gguccac    cguaa u
    a c     cc         ---       guaa     g 


Annotation confidence Not enough data
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Genome context
chrX: 40073284-40073367 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from eca-mir-500-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-500

Accession MIMAT0013223
Description Equus caballus eca-miR-500 mature miRNA
Sequence 13 - UAAUCCUUGCUACCUGGGUGAGA - 35
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131