miRBase entry: eca-mir-450a

Stem-loop eca-mir-450a


Accession
MI0012965
Description
Equus caballus eca-mir-450a precursor miRNA
Gene family
MIPF0000128; mir-450

Literature search
2 open access papers mention eca-mir-450a
(2 sentences)

Sequence

834 reads, 126 reads per million, 1 experiments
gaaagaugcuaaacuguUUUUGCGAUGUGUUCCUAAUAUgcaguauaaauauauugggagcauuuugcaugcaugguuuuguaucaauaua
....(((((.(((((((...(((((.((((((((((((((.........)))))))))))))).)))))...))))))).)))))......

Structure
--gaaa     u       UUU     U              cag 
      gaugc aaacugu   UGCGA GUGUUCCUAAUAUg   u
      ||||| |||||||   ||||| ||||||||||||||   a
      cuaug uuuggua   acguu uacgaggguuauau   u
auauaa     u       cgu     u              aaa 


Annotation confidence Not enough data
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Genome context
chrX: 106948818-106948908 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from eca-mir-450a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-450a

Accession MIMAT0013219
Description Equus caballus eca-miR-450a mature miRNA
Sequence 18 - UUUUGCGAUGUGUUCCUAAUAU - 39
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131