Stem-loop sequence eca-mir-1912

Accession

MI0012948 (change log)

Description

Equus caballus miR-1912 stem-loop

Gene family

MIPF0000768; mir-1912

Literature search

1 open access papers mention eca-mir-1912
(1 sentences)

Stem-loop

   ---     gg    g u         gg   u    auuu 
5'    cucua  augu c cauugcaug  cug guau    u
      |||||  |||| | |||||||||  ||| ||||    u
3'    gagau  uaca g gugacgugc  gac caua    a
   uua     aa    a u         ga   c    acuu 

Deep sequencing

13 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chrX: 90706739-90706818 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-1912

• eca-mir-1912: chrX: 90706739-90706818 [+]
• eca-mir-1264: chrX: 90707867-90707935 [+]

Database links

• EntrezGene:MIR1912
• miRBase Tracker:MI0012948

Mature sequence eca-miR-1912

• Accession: MIMAT0013201
• Sequence: 46 - uacccagagcgugcagugugaa - 67
• Deep sequencing: 12 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).