miRBase entry: eca-mir-1298

Stem-loop eca-mir-1298


Accession
MI0012944
Description
Equus caballus eca-mir-1298 precursor miRNA
Gene family
MIPF0000598; mir-1298


Sequence

298 reads, 45 reads per million, 1 experiments
aagaugaggaguuaagagUUCAUUCGGCUGUCCAGAUGUAuccaaguacccaguuauuuggcaauaaauacaucugggcaacugauugaacuuuucgcuuuucaugacuca
...(((((((((.(((((((((.((((.((((((((((((((((((((......)))))))......))))))))))))).)))).))))))))).)))))))))......

Structure
---aag         u         U    C             ------       cc 
      augaggagu aagagUUCA UCGG UGUCCAGAUGUAu      ccaagua  c
      ||||||||| ||||||||| |||| |||||||||||||      |||||||   
      uacuuuucg uuuucaagu aguc acgggucuacaua      gguuuau  a
acucag         c         u    a             aauaac       ug 


Annotation confidence Not enough data
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Genome context
chrX: 90781532-90781642 [+]

Database links

Mature eca-miR-1298

Accession MIMAT0013196
Description Equus caballus eca-miR-1298 mature miRNA
Sequence 19 - UUCAUUCGGCUGUCCAGAUGUA - 40
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131