Stem-loop eca-let-7c

Accession

MI0012925

Description

Equus caballus eca-let-7c precursor miRNA

Gene family

MIPF0000002; let-7

Literature search

5 open access papers mention eca-let-7c
(8 sentences)

Sequence

23011 reads, 3483 reads per million, 1 experiments

gguUGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaacuguacaaccuucuagcuuuccu
((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).))).)).

Structure

-  uU   G   U             ua  g ua  c 
 gg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
 ||  ||| ||| |||||||||||||  || |  || c
 cc  uuc auc uccaacaugucaa  uu a  gu  
u  -u   g   u             --  g gg  c 

Annotation confidence Not enough data

Genome context

chr26: 15509722-15509792 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-let-7c

Mature eca-let-7c

• Accession: MIMAT0013181
• Description: Equus caballus eca-let-7c mature miRNA
• Sequence: 4 - UGAGGUAGUAGGUUGUAUGGUU - 25
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131