miRBase entry: eca-mir-199b

Stem-loop eca-mir-199b


Accession
MI0012922
Description
Equus caballus eca-mir-199b precursor miRNA
Gene family
MIPF0000040; mir-199


Sequence

48713 reads, 7374 reads per million, 1 experiments
gucuaCCCAGUGUUUAGACUAUCUGUUCaggacucccaaauuguACAGUAGUCUGCACAUUGGUUAggc
(((((.(((((((.(((((((.((((.(((..........))).))))))))))).))))))).)))))

Structure
     C       U       U    U   gacu 
gucua CCAGUGU UAGACUA CUGU Cag    c
||||| ||||||| ||||||| |||| |||     
cggAU GGUUACA GUCUGAU GACA guu    c
     U       C       -    u   aaac 


Annotation confidence High
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Genome context
chr25: 31553692-31553760 [-]

Database links

Mature eca-miR-199b-5p

Accession MIMAT0013780
Description Equus caballus eca-miR-199b-5p mature miRNA
Sequence 6 - CCCAGUGUUUAGACUAUCUGUUC - 28
Evidence not_experimental

Mature eca-miR-199b-3p

Accession MIMAT0013781
Description Equus caballus eca-miR-199b-3p mature miRNA
Sequence 45 - ACAGUAGUCUGCACAUUGGUUA - 66
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131