Stem-loop sequence eca-mir-656

Accession

MI0012915 (change log)

Description

Equus caballus miR-656 stem-loop

Gene family

MIPF0000018; mir-154

Literature search

1 open access papers mention eca-mir-656
(1 sentences)

Stem-loop

   ---------- u    u      c     ag       cuu  u 
5'           c gaaa agguug cugug  guguuca   uc a
             | |||| |||||| |||||  |||||||   || u
3'           g cuuu uccaac gacau  uauaagu   ag a
   cuaagcuaag c    c      u     au       ---  c 

Deep sequencing

214 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr24: 42937011-42937088 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-656

• eca-mir-154a: chr24: 42930163-42930226 [+]
• eca-mir-154b: chr24: 42930413-42930553 [+]
• eca-mir-496: chr24: 42930990-42931092 [+]
• eca-mir-377: chr24: 42932739-42932807 [+]
• eca-mir-541: chr24: 42934714-42934797 [+]
• eca-mir-409: chr24: 42935634-42935712 [+]
• eca-mir-412: chr24: 42935784-42935863 [+]
• eca-mir-369: chr24: 42935933-42936002 [+]
• eca-mir-410: chr24: 42936264-42936337 [+]
• eca-mir-656: chr24: 42937011-42937088 [+]

Database links

• EntrezGene:MIR656
• miRBase Tracker:MI0012915

Mature sequence eca-miR-656

• Accession: MIMAT0013172
• Sequence: 43 - aauauuauacagucaaccucu - 63
• Deep sequencing: 213 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).