miRBase entry: eca-mir-656

Stem-loop eca-mir-656


Accession
MI0012915
Description
Equus caballus eca-mir-656 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
1 open access papers mention eca-mir-656
(1 sentences)

Sequence

190 reads, 29 reads per million, 1 experiments
cugaaauagguugccugugagguguucacuuucuauacgaugAAUAUUAUACAGUCAACCUCUuuccggaaucgaauc
..((((.((((((.(((((.((((((((...((.....)))))))))).))))).)))))).))))............

Structure
----------cu    u      c     a        cuu  u 
            gaaa agguug cugug gguguuca   uc a
            |||| |||||| ||||| ||||||||   || u
            cuuU UCCAAC GACAU UUAUAAgu   ag a
cuaagcuaaggc    C      U     A        ---  c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr24: 42937011-42937088 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from eca-mir-656
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-656

Accession MIMAT0013172
Description Equus caballus eca-miR-656 mature miRNA
Sequence 43 - AAUAUUAUACAGUCAACCUCU - 63
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131