miRBase entry: eca-mir-543

Stem-loop eca-mir-543


Accession
MI0012912
Description
Equus caballus eca-mir-543 precursor miRNA
Gene family
MIPF0000110; mir-329


Sequence

55 reads, 8 reads per million, 1 experiments
cuuaaggagaaguugcccguguuuuuuucgcuuuauuugugacgAAACAUUCGCGGUGCACUUCUUuuucag
((.((((((((((.(((((((..(.((((((.........).))))).)..))))).)))))))))))).))

Structure
  u          u  -     uu u     - uuu 
cu aaggagaagu gc ccgug  u uuucg c   a
|| |||||||||| || |||||  | ||||| |   u
ga uuuUUCUUCA CG GGCGC  A AAAgc g   u
  c          -  U     UU C     a ugu 


Annotation confidence Not enough data
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Genome context
chr24: 42904247-42904318 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from eca-mir-543
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-543

Accession MIMAT0013169
Description Equus caballus eca-miR-543 mature miRNA
Sequence 45 - AAACAUUCGCGGUGCACUUCUU - 66
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131